Explore Workflows
View already parsed workflows here or click here to add your own
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Detect DoCM variants
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![]() Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 193b8de694f262ad55c7635a603c20c124748583 |
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revcomp.cwl
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![]() Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp.cwl Branch/Commit ID: 517487e59d240c197fc91f08d20dadca97a9e121 |
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bam to trimmed fastqs and HISAT alignments
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![]() Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 700e73aaed6db1ad538dd27b2e1709f436ad3edb |
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Example of setting up a simulation system
Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI). |
![]() Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl Branch/Commit ID: 1ceb79101ec98fbfc142a5f70ca23a8b49efc2ea |
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count-lines5-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41 |
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workflow.cwl
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![]() Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: 243ba78438c6e9dfa3dfbfd6751124c978dd1c25 |
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Nested workflow example
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![]() Path: tests/wf/nested.cwl Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b |
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count-lines4-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl Branch/Commit ID: 520acbfb82455c4bdabd5f2ea24842804e1c9f58 |
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scatter-wf4.cwl#main
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![]() Path: v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: fe164457f370c2dfec5156f6d6d45818d53cb871 Packed ID: main |
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RNA-Seq alignment and transcript/gene abundance workflow
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![]() Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: ac87e0584685fe04e4010ecd77ae4f055f21d788 |