Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data ### Devel version of QuantSeq 3' FWD, FWD-UMI or REV for single-read mRNA-Seq data	https://github.com/datirium/workflows.git Path: workflows/trim-quantseq-mrnaseq-se-strand-specific.cwl Branch/Commit ID: 8bf36bfad5624fbc8fc315e82783a44e9e5e4470
	Build STAR indices Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome.	https://github.com/datirium/workflows.git Path: workflows/star-index.cwl Branch/Commit ID: 2cad55523d1b4ee7fd9e64df0f6263c6545e4b0e
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4
	exomeseq-03-organizedirectories.cwl	https://github.com/Duke-GCB/bespin-cwl.git Path: subworkflows/exomeseq-03-organizedirectories.cwl Branch/Commit ID: 92b8d41bab2661919aa11aa84e1923748f8503c4
	scatter-valuefrom-inputs-wf1.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/scatter-valuefrom-inputs-wf1.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
	io-int-default-tool-and-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/io-int-default-tool-and-wf.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37
	io-file-default-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/io-file-default-wf.cwl Branch/Commit ID: a0f2d38e37ff51721fdeaf993bb2ab474b17246b
	rnaseq-pe-dutp-mitochondrial.cwl RNA-Seq strand specific mitochondrial workflow for pair-end experiment based on BioWardrobe's basic analysis.	https://github.com/datirium/workflows.git Path: workflows/rnaseq-pe-dutp-mitochondrial.cwl Branch/Commit ID: 62323c137c0ce9b3f843df0dfbda28dafa7c90cf
	ani.cwl Perform taxonomic identification tasks on an input genome	https://github.com/ncbi/pgap.git Path: ani.cwl Branch/Commit ID: b0ee40d34d233f1611c2e2c66b6d22a3b7deec05
	mut.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/mut.cwl Branch/Commit ID: 3ed10d0ea7ac57550433a89a92bdbe756bdb0e40