Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0746e12 |
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wf_contam_detect.cwl
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https://github.com/ncbi/pipelines.git
Path: contam_filter/wf_contam_detect.cwl Branch/Commit ID: master |
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align-test-files-pack.cwl#main
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/align-test-files-pack.cwl Branch/Commit ID: master Packed ID: main |
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Detect Variants workflow for WGS pipeline
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: downsample_and_recall |
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create_snap_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: create_snap_and_analyze.cwl Branch/Commit ID: v1.0 |
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wf_rnaediting2strands.cwl
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https://github.com/YeoLab/sailor.git
Path: cwl/wf_rnaediting2strands.cwl Branch/Commit ID: master |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
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inpdir_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inpdir_update_wf.cwl Branch/Commit ID: main |
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methylCtools_singlelib.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/methylCtools/methylCtools_singlelib.cwl Branch/Commit ID: main |
