Explore Workflows

https://github.com/puentesdiaz/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: master

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: master

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/cmsearch-multimodel-wf.cwl

Branch/Commit ID: cwlexec

Whole Exome Sequence preprocessing using GATK4 - v2.2.0

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: develop

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-paired.cwl

Branch/Commit ID: master

https://github.com/bio-ontology-research-group/pangenome.git

Path: workflows/variant-calling/main-vg.cwl

Branch/Commit ID: main

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: sc_atac_seq_prep_process_analyze.cwl

Branch/Commit ID: 06aeffe

ATAC-seq pipeline - reads: PE - with blacklist removal

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 0fed1c9

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: develop