Explore Workflows
View already parsed workflows here or click here to add your own
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Chipseq alignment for nonhuman with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: 0d2f354af9192a56af258a7d2426c7c160f4ec1a |
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qc_workflow_wo_waltz.cwl
This workflow is intended to be used to test the QC module, without having to run the long waltz step |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf |
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waltz_workflow_all_bams.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf |
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qc_workflow.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/QC/qc_workflow.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf |
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helloworld.cwl
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https://github.com/reanahub/reana-demo-helloworld.git
Path: workflow/cwl/helloworld.cwl Branch/Commit ID: 7cc1bc6d12138ea7f2712316b5ef746267006433 |
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abra_workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a |
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bqsr_workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/BQSR/bqsr_workflow.cwl Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 0d2f354af9192a56af258a7d2426c7c160f4ec1a |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a |
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module-2.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/module-2.cwl Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a |
