Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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![]() Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5e82174 |
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Varscan Workflow
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![]() Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: master |
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record-in-secondaryFiles-missing-wf.cwl
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![]() Path: tests/record-in-secondaryFiles-missing-wf.cwl Branch/Commit ID: master |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
![]() Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-05-phylogeny.cwl |
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qiime2 demux paired sequences
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![]() Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-02-demux-emp-paired.cwl |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
![]() Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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functional analysis prediction with InterProScan
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![]() Path: workflows/functional_analysis.cwl Branch/Commit ID: ca6ca613 |
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bwa_mem
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![]() Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.5 |
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assm_assm_blastn_wnode
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![]() Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 0d0ba0c3410e8aee55c82f077cee31d8ee929b5a |
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FragPipe: TMT Integrator and QC
This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets). |
![]() Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl Branch/Commit ID: main |