Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG pipeline v4.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-single.cwl Branch/Commit ID: master |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: v1.0 |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: ef3c7b2 |
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cram_to_bam workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: low-vaf |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: master |
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Transcriptome assembly workflow (single-end version)
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptomeAssembly-wf.single-end.cwl Branch/Commit ID: assembly |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 3b602cb |
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assembly.cwl
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https://github.com/vetscience/Assemblosis.git
Path: Run/assembly.cwl Branch/Commit ID: master |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: master |
