Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
alignment_workflow_md5checker.cwl
|
https://github.com/databiosphere/topmed-workflows.git
Path: aligner/topmed-cwl/workflow/alignment_workflow_md5checker.cwl Branch/Commit ID: 6478d5df50d7340311d18f03a056e3db97811269 |
|
|
|
Cell Ranger ARC Count Gene Expression + ATAC
Cell Ranger ARC Count Gene Expression + ATAC ============================================ |
https://github.com/datirium/workflows.git
Path: workflows/cellranger-arc-count.cwl Branch/Commit ID: b14e361e7b99b7233facfb9f68ac9b22406d74ee |
|
|
|
heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/datirium/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: 77970404d7c704cba965ae646582e19e5d76aabe |
|
|
|
allele-process-reference.cwl
|
https://github.com/datirium/workflows.git
Path: subworkflows/allele-process-reference.cwl Branch/Commit ID: 94471ee6c01b7bc17102e45e56e7366c2a52acdf |
|
|
|
allele-process-strain.cwl
|
https://github.com/datirium/workflows.git
Path: subworkflows/allele-process-strain.cwl Branch/Commit ID: 94471ee6c01b7bc17102e45e56e7366c2a52acdf |
|
|
|
Varscan Workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2 |
|
|
|
Detect DoCM variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2 |
|
|
|
tRNA_selection.cwl
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: caea457b17388fdc5cb088364c194504ae736bdd |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c |
|
|
|
adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 295e7b7f51727c0f2d6cc86ce817449b2e8dba3c |
