Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	umi molecular alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	oc-workflow.cwl	https://github.com/KarchinLab/opencravat-cwl.git Path: oc-workflow.cwl Branch/Commit ID: ede16fc1c8b957823a8a1d826c8b5a2cf4c677c8
	kfdrc_bwamem_subwf.cwl	https://github.com/kids-first/kf-alignment-workflow.git Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: 0ce16a1ff9219b02b075800ec4f08be1cb60482e
	grep-and-count.cwl	https://github.com/manabuishii/cwl-samples.git Path: grep-and-count.cwl Branch/Commit ID: bee68ab4a890e552ab341558a305206b5f310a73
	bam to trimmed fastqs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	pindel parallel workflow	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73
	BwaAligner_1_0_0.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/BwaAligner_1_0_0.cwl Branch/Commit ID: db347697cbf46ed1d160d50666943bd56a2646f4
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d