Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	step-valuefrom3-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/step-valuefrom3-wf.cwl Branch/Commit ID: 5ae5798f1c0c8d2178986b77cfd74edff510877a
	Single-Cell WNN Cluster Analysis Single-Cell WNN Cluster Analysis Clusters cells by similarity on the basis of both gene expression and chromatin accessibility data from the outputs of the “Single-Cell RNA-Seq Dimensionality Reduction Analysis” and “Single-Cell ATAC-Seq Dimensionality Reduction Analysis” pipelines run sequentially. The results of this workflow are used in the “Single-Cell Manual Cell Type Assignment”, “Single-Cell RNA-Seq Differential Expression Analysis”, “Single-Cell RNA-Seq Trajectory Analysis”, “Single-Cell Differential Abundance Analysis”, “Single-Cell ATAC-Seq Differential Accessibility Analysis”, and “Single-Cell ATAC-Seq Genome Coverage” pipelines.	https://github.com/datirium/workflows.git Path: workflows/sc-wnn-cluster.cwl Branch/Commit ID: b4d578c2ba4713a5a22163d9f8c7105acda1f22e
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome.cwl Branch/Commit ID: ddb49a0951d9ad537269d7db3fe8f904495a8bf4
	Filter differentially expressed genes from DESeq for Tag Density Profile Analyses Filters differentially expressed genes from DESeq for Tag Density Profile Analyses ================================================================================== Tool filters output from DESeq pipeline run for genes to create a file with regions of interest for Tag Density Profile Analyses.	https://github.com/datirium/workflows.git Path: workflows/filter-deseq-for-heatmap.cwl Branch/Commit ID: f3e44d3b0f198cf5245c49011124dc3b6c2b06fd
	Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: ddb49a0951d9ad537269d7db3fe8f904495a8bf4
	rnaseq-se-dutp.cwl Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/rnaseq-se-dutp.cwl Branch/Commit ID: e89b2c17aa5efccef6ca424dec5a0a021bd8d20c
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: a2d6cd4c53bf3501f6bd79edebb7ca30bba8456f
	js-expr-req-wf.cwl#wf	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: d7cd45f7072960d264962ecc5a04d7c219f65c06 Packed ID: wf
	revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/revsort.cwl Branch/Commit ID: 2a8af96d334e6979cb00af4569581d192d43ce41