Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: 662d424d2e433e636f46a79025325d5daaca6271 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 1bf7dc7b03ea3c64e54375cc5c3767849a801000 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: 2c486543c335bb99b245dfe7e2f033f535efb9cf |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: bba6c580ab88e077f6aa2c2ee7c73159f3f9156e |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 7319ccfd2108929588bdc266d9df198629dfaa65 |
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mut2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut2.cwl Branch/Commit ID: fec7a10466a26e376b14181a88734983cfb1b8cb |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: a7838a5ca72b25db5c2af20a15f34303a839980e |
