Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c
	etl_http.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/etl_http.cwl Branch/Commit ID: 14558b578bad217685ae3c4807ead2a4392d0319
	tt_fscr_calls_pass1	https://github.com/ncbi/pgap.git Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: a432f942e325da401488be454fa0f1100d9e6189
	directory.cwl Inspect provided directory and return filenames. Generate a new directory and return it (including content).	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/directory.cwl Branch/Commit ID: f0a844af6f93883fcacb3572a6366124a50d0909
	extract_amplicon_kit.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_amplicon_kit.cwl Branch/Commit ID: 3cd06184444bb85e9773a3e7dc548c6dd3bdaccb
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: ce6b6948f82a7d521b9f11c2d9dc73e3b009ebbe
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: ce6b6948f82a7d521b9f11c2d9dc73e3b009ebbe
	Chipseq alignment for mouse with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_mouse.cwl Branch/Commit ID: 700e73aaed6db1ad538dd27b2e1709f436ad3edb
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: ce6b6948f82a7d521b9f11c2d9dc73e3b009ebbe
	harmonization_bwa_mem_no_trim.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_no_trim.cwl Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999