Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	extract_readgroup_fastq_se.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/extract_readgroup_fastq_se.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: dcbbce152fbff2637f102471fb80318244492853
	exome_metrics.cwl	https://github.com/nci-gdc/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/exome_metrics.cwl Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c
	Bisulfite alignment and QC	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/bisulfite.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: f58bb8121e49a72cf7419a4a38c08f01b931dd37
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: fa0bf2a51b72cd0869253943b67aa8e271633945
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: dcbbce152fbff2637f102471fb80318244492853
	Per-region pindel	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73
	bgzip and index VCF	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: 1a908acc8059c2381ed146c6be1668f4bf1cfa73