Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Non-Coding Bacterial Genes	https://github.com/ncbi/pgap.git Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	wf_clipseqcore_pe_2barcodes.cwl Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs	https://github.com/YeoLab/eclip.git Path: cwl/wf_clipseqcore_pe_2barcodes.cwl Branch/Commit ID: b4be31e4b809716f65354c0a3d0eff49949eabff
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	Seed Protein Alignments I	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	STAR-Alignment-PE This workflow aligns the fastq files using STAR for paired-end samples	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Alignments/star-alignment.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795
	vecscreen.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/vecscreen.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b
	rnaseq-alignment-quantification This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795
	download_quality_control.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/sra/download_quality_control.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795