Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
Unaligned BAM to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
||
count-lines11-null-step-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-null-step-wf.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |
||
kmer_seq_entry_extract_wnode
|
https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225 |
||
strelka workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
||
STAR-RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
||
kmer_ref_compare_wnode
|
https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225 |
||
count-lines9-wf-noET.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines9-wf-noET.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |
||
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
||
somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
||
count-lines17-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines17-wf.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |