Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Replace legacy AML Trio Assay
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: low-vaf |
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CNV_pipeline
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 1.0.5 |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-04-features.cwl |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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anonymize.cwl
Replace named entities in a directory of text files. Can be used as part of an data anonymization workflow. |
https://github.com/WhatWorksWhenForWhom/nlppln.git
Path: nlppln/cwl/anonymize.cwl Branch/Commit ID: master |
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qiime2 demux sequences
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-02-demux.cwl |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: master |
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Instac stage-in
Stage-in using Instac |
https://github.com/EOEPCA/app-vegetation-index.git
Path: instac.cwl Branch/Commit ID: master Packed ID: main |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_exome_mouse.cwl Branch/Commit ID: downsample_and_recall |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: master |
