Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment with qc	https://github.com/litd/analysis-workflows.git Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7
	fastq_clean_pe.cwl	https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git Path: workflows/mirnaseq_automation/fastq_clean_pe.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
	SSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: c2110714be230861ee7b96adc3db6e32e5248c57
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	snaptools_create_snap_file.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: ffcc84c3376c4bd10738e22b7daec6a0aaa37108
	ani_top_n	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: b51e37098871db9fbb7ee0cc642df98ddbb9092b
	tRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/tRNA_selection.cwl Branch/Commit ID: 0fed1c959ab33112eae46fb02fceffa8bb26b811
	GEM peak calling This workflow execute peak calling using GEM	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/gem.cwl Branch/Commit ID: 33123d6a92bf0038951820d0d2c9cf501ae2ebf6
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	kmer_build_tree	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: b51e37098871db9fbb7ee0cc642df98ddbb9092b