Explore Workflows
View already parsed workflows here or click here to add your own
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ST520117.cwl
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Path: wf5201/ST520117.cwl Branch/Commit ID: main |
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cnv_manta
CNV Manta calling |
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 1.0.7 |
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04-quantification.cwl
STARR-seq 04 quantification |
Path: v1.0/STARR-seq_pipeline/04-quantification.cwl Branch/Commit ID: master |
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wf_trim_and_map_chimeric_se.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
Path: cwl/wf_trim_and_map_chimeric_se.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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Path: definitions/subworkflows/align.cwl Branch/Commit ID: master |
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: subworkflows/qiime2-09-ancom.cwl Branch/Commit ID: develop |
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trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
Path: structuralvariants/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 3bb03c9b |
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5S-from-tablehits.cwl
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Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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Functional analyis of sequences that match the 16S SSU
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Path: workflows/16S_functional_analysis.cwl Branch/Commit ID: caea457 |
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ani_top_n
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Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: master |
