Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b |
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checkm
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https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b |
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Water body detection based on NDWI and otsu threshold
Water body detection based on NDWI and otsu threshold |
https://github.com/Terradue/ogc-eo-application-package-hands-on.git
Path: water-bodies/app-package.cwl Branch/Commit ID: 08b5aee8764269bf92c41b0fd67f42683196b41e Packed ID: detect_water_body |
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Detect Variants workflow for WGS pipeline
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46 |
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workflow_single.cwl
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https://github.com/emrecdem/erd-etl.git
Path: workflow_single.cwl Branch/Commit ID: 14e02270a1079c349c49236d6428926847a5823d |
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umi duplex alignment workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Detect Variants workflow for WGS pipeline
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f |
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wgs alignment with qc
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Per-region pindel
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
