Explore Workflows
View already parsed workflows here or click here to add your own
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ChIP-seq peak caller workflow MACS2 based
This workflow execute peak caller and QC for ChIP-seq using MACS2 |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795 |
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MEME motif
This workflow uses MEME suite for motif finding |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/meme-motif.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795 |
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chip-seq-alignment.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/chip-seq-alignment.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795 |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416 |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6 |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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etl.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/etl.cwl Branch/Commit ID: 364e09820eb96dd3eec5ab59ef97e38140cf8d53 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: 3aabbb0f6635bb9354ad52f616ab7cfc61848eb6 |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
