Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/reanahub/reana-demo-root6-roofit.git

Path: workflow/cwl/workflow.cwl

Branch/Commit ID: 2cbb3ae1500417c12fd5403908ab1299a889172f
workflow graph Restore contig names

Restore the contig names using the map file in ppmeta, virfinder and virsorter output files.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/RestoreOutputNames/restore_tools_outputs_swf.cwl

Branch/Commit ID: aad5474411ea31449b3e8a26eeed8920dd07fa17
workflow graph merge and annotate svs with population allele freq and vep

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/merge_svs.cwl

Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
workflow graph umi duplex alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/duplex_alignment.cwl

Branch/Commit ID: 641083e9ed933d388f36fa04c00c20a810599e94
workflow graph SV filtering workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_sv_vcf.cwl

Branch/Commit ID: 1560e7817fdb71d58aca7f98aba68809d840ade1
workflow graph workflow_neuroproof_train.cwl

local

 https://github.com/aplbrain/saber.git

Path: saber/i2g/examples/I2G_Neuroproof/workflow_neuroproof_train.cwl

Branch/Commit ID: 051b9506fd7356113be013ac3c435a101fd95123
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: c009eeba7379efbbd37b8d5013a83f161f06939b
workflow graph Apply filters to VCF file

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/filter_vcf.cwl

Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
workflow graph Varscan Workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f