Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph ChIP-seq peak caller workflow MACS2 based

This workflow execute peak caller and QC for ChIP-seq using MACS2

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph Run tRNAScan

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_trnascan.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
workflow graph workflow.cwl

https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git

Path: Workflows/PSD_workflow_2/workflow.cwl

Branch/Commit ID: 0730e9965cb59b4a29cb5b0b588384839d0a017b
workflow graph rhapsody_targeted_1.9-beta.cwl#VDJ_SplitValidReads.cwl

VDJ_SplitValidReads splits fasta files to be multi-processed in the VDJ step.

https://github.com/longbow0/cwl.git

Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl

Branch/Commit ID: b9ec66d82bc04934fbe9f9088ae7e802d72c4a4e

Packed ID: VDJ_SplitValidReads.cwl
workflow graph preparation_workflow.cwl

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: utils-cwl/subworkflow/preparation_workflow.cwl

Branch/Commit ID: 58b62b1bf329b3fbffbd5d9080709999bebc1763
workflow graph ani_top_n

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5
workflow graph abc_step01

https://github.com/davidroberson/workflow-notebooks.git

Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl.steps/abc_step01.cwl

Branch/Commit ID: 6146d0867e60b9f72da3239fd800bfc5dc914700
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
workflow graph Sentinel-3 SLSTR Level-2 reprojection and tiling

This service takes as input a Sentinel-3 SLSTR Level 2 (SL_2_LST____) product on DESCENDING pass and does the reprojection and tiling

 https://github.com/EOEPCA/proc-ades.git

Path: docs/examples/slstr-tiling.cwl

Branch/Commit ID: 1270da52f1b35fcb9808aa55de54265394eda2fa

Packed ID: slstr-tiling
workflow graph scatter-wf3.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl

Branch/Commit ID: 6003cbb94f16103241b562f2133e7c4acac6c621

Packed ID: main