Explore Workflows

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/duplicated_readgroup_fix.cwl

Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471

# Metaphlan-ISBCGC # Overview This is an example of how to add a description to a workflow. This uses markdown and can show things like images and links.

https://github.com/dockstore-testing/Metaphlan-ISBCGC.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: e03c029da6f291cda83667e8a92d5453af9b45f4

Reverse the lines in a document, then sort those lines.

https://github.com/Duke-GCB/calrissian.git

Path: input-data/revsort-single.cwl

Branch/Commit ID: 0d2fb1751fcd45ee6233f9f78edc3aeccbfc9254

DNase-seq - map - Filter PCR Artifacts

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/map/filter-pcr-artifacts.cwl

Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/docm_germline.cwl

Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/bwa-alignment.cwl

Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795

https://github.com/ncbi/pgap.git

Path: progs/protein_extract.cwl

Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee