Explore Workflows

https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines1-wf-noET.cwl

Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-02-variantdiscovery.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856

https://github.com/LanderOtto/tmp.git

Path: cwl/iteration.cwl

Branch/Commit ID: main

https://github.com/LanderOtto/tmp.git

Path: cwl/main.cwl

Branch/Commit ID: main

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-stringtie/single_end/hisat2-stringtie_wf_se.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856

Run hmmscan over an array of files (supports empty or non existent files). Each file will be chunked in 1000 sequences per file to improve the performance. The output will be the concatenation of the output tables.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/HMMScan/hmmscan_swf.cwl

Branch/Commit ID: 3708071d71b19e72c71c06dd2c8aa3c5a0eb232c

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: f4c51a054b1ec51d07d89c6a8218e610653675f3