Explore Workflows

https://github.com/NCI-GDC/gdc_tosvc_workflow.git

Path: gdc-purecn-tumor-only-filtration-cwl/gpas_purecn_tumor_only_filtration.cwl

Branch/Commit ID: master

https://github.com/TMCantwell/pulsar_timing_prototype.git

Path: pulsar_timing_prototype_workflow.cwl

Branch/Commit ID: master

This workflow returns the reproducible number of split peaks given a single bam file and its size-matched input pair. This workflow splits the bam file first, but does not do anything to the input.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_split_self_and_idr.cwl

Branch/Commit ID: master

Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: bio-cwl-tools/sratoolkit/prefetch_fastq.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/stats/stats.cwl

Branch/Commit ID: demo

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: main

Vegetation index processor, the greatest

https://github.com/EOEPCA/app-vegetation-index.git

Path: vegetation-index.cwl

Branch/Commit ID: master

Packed ID: vegetation-index

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.6

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-parse-current.cwl

Branch/Commit ID: master

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520104.cwl

Branch/Commit ID: main