Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph stage_data_workflow.vcf_to_aliquot_maf.cwl

https://github.com/NCI-GDC/aliquot-maf-cwl.git

Path: vcf-to-aliquot-maf/subworkflows/stage_data_workflow.vcf_to_aliquot_maf.cwl

Branch/Commit ID: 9aedc3fb22a3f5b9146bc5e9a393085050f90c95
workflow graph preparation_workflow.cwl

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: utils-cwl/subworkflow/preparation_workflow.cwl

Branch/Commit ID: 58b62b1bf329b3fbffbd5d9080709999bebc1763
workflow graph transcriptome-assembly.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a
workflow graph mutect2_and_filter.cwl

Runs mutect2 variant calling and and variant filter.

 https://github.com/demichelislab/SPICE-pipeline-CWL.git

Path: cwl/workflows/mutect2_and_filter.cwl

Branch/Commit ID: 06e4a6f868651c8e26a88db518af1974159ecba9
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2
workflow graph contamination_cleanup

This workflow detect and remove contamination from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contamination-cleanup.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/baghdadite/deconv/workflow.cwl

Branch/Commit ID: ed5dd0589aa951193f4b98f44b0edc7f58e04ba5
workflow graph create_snap_and_analyze.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: create_snap_and_analyze.cwl

Branch/Commit ID: 4b2af54638bc471ee3e14e5f49546a2b6860804e
workflow graph blast2tree_v2.cwl

blastp, awk, blastdbcmd, clustalo, and fasttreeの5つのステップを実行

 https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl_bioinformatics/blast2tree_v2.cwl

Branch/Commit ID: 4aa7ab4e4f8eed6b676ea04c53afd3fe57d2ca7b
workflow graph GATKBaseRecalBQSRWorkflow_4_1_3.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl

Branch/Commit ID: d1bcf010d5c39d5fc01b8862db4f258df7d4f65d