Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph loadingAD_chunkWF.cwl

https://github.com/arvados/l7g-ml.git

Path: ADAnalysis/cwl/loadingAD_chunkWF.cwl

Branch/Commit ID: e4f5bc41d307ae307e7549f128183839b30b9018
workflow graph pair-workflow-sv.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/pair-workflow-sv.cwl

Branch/Commit ID: 507efdf727d2a5ec7b91007e7c953b1a2d81b288
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-fasta.workflow.cwl

Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
workflow graph animal-genome-assembly.cwl

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.cwl

Branch/Commit ID: 6db4456ca7314b036e59f50910654066da99772a
workflow graph segmentation.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/segmentation.cwl

Branch/Commit ID: 2e31b8ddd4d509c7bbcb983ad41e401687623ddb
workflow graph qc_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a
workflow graph steplevel-resreq.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/steplevel-resreq.cwl

Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df
workflow graph call_variants.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: 3441040dfaecba58150c13a95a6a93657b00778a
workflow graph platanusB-default.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/platanusB-default.cwl

Branch/Commit ID: e316f37f502005165ebd7f22b5257900c7c712ac
workflow graph Hmmscan

Run hmmscan over an array of files (supports empty or non existent files). Each file will be chunked in 1000 sequences per file to improve the performance. The output will be the concatenation of the output tables.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/HMMScan/hmmscan_swf.cwl

Branch/Commit ID: aad5474411ea31449b3e8a26eeed8920dd07fa17