Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ATACseq_aligned.cwl
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https://github.com/CompEpigen/ATACseq_workflows.git
Path: CWL/workflows/ATACseq_aligned.cwl Branch/Commit ID: master |
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SetArrayElementCoordinates
Transform array element coordinates into the coordinate system required by the simulation pipeline (i.e., CORSIKA system). |
https://gitlab.desy.de/gernot.maier/cwlsandbox.git
Path: workflows/SetArrayElementCoordinates.cwl Branch/Commit ID: main |
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hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_cufflink_cuffmerge_cuffquant_ballgown.cuffdiffs.cwl Branch/Commit ID: master |
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Per-region pindel
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: downsample_and_recall |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: master |
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bismark_chimeric_singlelib.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/Bismark_chimeric/bismark_chimeric_singlelib.cwl Branch/Commit ID: main |
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validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.3.2 |
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hashsplitter-workflow.cwl
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https://github.com/uniqueg/cwl-example-workflows.git
Path: hashsplitter-workflow.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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run_workflow_234.cwl
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https://github.com/ncbi/cwl-demos.git
Path: outlier-hit-detection-pipeline/run_workflow_234.cwl Branch/Commit ID: master |
