Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 664e99a23a3ed4ba36c08323ac597c4fbcd88df1 |
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workflow_mock_ngtax.cwl
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https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_mock_ngtax.cwl Branch/Commit ID: b9097b82e6ab6f2c9496013ce4dd6877092956a0 |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: d746755df4077476b662271a5d24c4220774a7ee |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 449f87c8365637e803ba66f83367e96f98c88f5c |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c |
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Interval overlapping alignments counts
Interval overlapping alignments counts ====================================== Reports the count of alignments from multiple samples that overlap specific intervals. |
https://github.com/datirium/workflows.git
Path: workflows/bedtools-multicov.cwl Branch/Commit ID: 581156366f91861bd4dbb5bcb59f67d468b32af3 |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/revsort.cwl Branch/Commit ID: 3e9bca4e006eae7e9febd76eb9b8292702eba2cb |
