Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: 98f0d136e869f23eca89a4188b257d63f30fc44b
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 9e5f228bc1a3d0dfe950b5d41d7e4319e834a6d4
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph wf_trim_and_map_pe.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_pe.cwl

Branch/Commit ID: e2a314ff7646c4ea7b90f65caad0452ef6874757
workflow graph exomeseq-gatk4-preprocessing/v2.2.0

Whole Exome Sequence preprocessing using GATK4 - v2.2.0

 https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: fd641e00364e257b2119ce5b26aedb01402dfcbe
workflow graph etl_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: 364e09820eb96dd3eec5ab59ef97e38140cf8d53
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
workflow graph Bisulfite QC tools

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
workflow graph wgs alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph bam to trimmed fastqs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec