Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 01-qc-se.cwl

ATAC-seq 01 QC - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1
workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
workflow graph bams2gvcf.woBQSR_female.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_female.cwl

Branch/Commit ID: 4c49df49844f3e82b8fc4f30a3809ac6dc4f299a
workflow graph fastqSE2bam.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqSE2bam.cwl

Branch/Commit ID: 4c49df49844f3e82b8fc4f30a3809ac6dc4f299a
workflow graph rnaseq-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/rnaseq-header.cwl

Branch/Commit ID: 77970404d7c704cba965ae646582e19e5d76aabe
workflow graph Unaligned BAM to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
workflow graph wf_rescue_ratio_1input.cwl

Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_rescue_ratio_1input.cwl

Branch/Commit ID: fadfca0f6da710104c4cf7931e9ab2656f5f737d
workflow graph 01-qc-pe.cwl

STARR-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c
workflow graph dynresreq-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/dynresreq-workflow.cwl

Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6