Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf_full_IDR_pipeline_2inputs_sample.cwl

This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl

Branch/Commit ID: master
workflow graph preprocess.cwl

https://github.com/klimstef/testing-for-Haqseq.git

Path: cwl_s/preprocess.cwl

Branch/Commit ID: master
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.4.1
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_nonhuman.cwl

Branch/Commit ID: master
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: master
workflow graph Exome QC workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: toil_compatibility
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: master
workflow graph Gathered Downsample and HaplotypeCaller

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/gathered_downsample_and_recall.cwl

Branch/Commit ID: master
workflow graph abc_step01

https://github.com/davidroberson/workflow-notebooks.git

Path: abc_enhancer_gene_prediction/abc-enchancer-gene-prediction-wf.cwl.steps/abc_step01.cwl

Branch/Commit ID: main
workflow graph pindel parallel workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: master