Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Functional analyis of sequences that match the 16S SSU
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: c1f8b22 |
|
|
|
SPRM pipeline
|
https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: 05b7aef |
|
|
|
EMG pipeline v3.0 (paired end version)
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 5e82174 |
|
|
|
Calculate reference coverage
|
https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/cna_reference_coverage.cwl Branch/Commit ID: master |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 5dc7c5c |
|
|
|
biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: v0.0.3 |
|
|
|
cond-wf-009.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-009.cwl Branch/Commit ID: main |
|
|
|
kmer_ref_compare_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: dev |
|
|
|
bgzip and index VCF
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: downsample_and_recall |
|
|
|
trimmed_fastq
Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed) |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/trimmed_fastq.cwl Branch/Commit ID: 1.1.3 |
