Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph DeriveArrayElementCoordinates

Derive array element coordinates and archive data generated in derivation process.

 https://github.com/gammasim/workflows.git

Path: workflows/DeriveArrayElementCoordinates.cwl

Branch/Commit ID: first-example
workflow graph AcceptAndArchive

Accept and archive simulation model parameter(s). Acceptances includes review of validation process.

 https://github.com/gammasim/workflows.git

Path: workflows/AcceptParameter.cwl

Branch/Commit ID: first-example
workflow graph ReceiveAndAssert

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

 https://github.com/gammasim/workflows.git

Path: workflows/ReceiveAndAssert.cwl

Branch/Commit ID: first-example
workflow graph wf_get_peaks_chimeric_se.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_chimeric_se.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph abra_workflow.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/ABRA/abra_workflow.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf
workflow graph Seed Search Compartments

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed.cwl

Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31
workflow graph ValidateArrayElementCoordinates

Plot and compare array element coordinates.

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/ValidateArrayElementCoordinates.cwl

Branch/Commit ID: 93ff5764b93a75088fa507912fa52f5feedb9690
workflow graph Run pindel on provided region

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_region.cwl

Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: d7b1bf353dcc43c707c49a018f2870584821d389
workflow graph waltz_workflow_all_bams.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/waltz/waltz_workflow_all_bams.cwl

Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf