Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph format_rrnas_from_seq_entry

https://github.com/ncbi/pgap.git

Path: task_types/tt_format_rrnas_from_seq_entry.cwl

Branch/Commit ID: cec32f5b60c1d048257e3c3daed6912d5d2a054e
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: 051074fce4afd9732ef34db9dd43d3a1d8e979d6
workflow graph Calibration inputs to Simulation Model

This workflow produces calibration inputs to simulation model: - atmospheric model - extinction hypercube - telescopes' cameras configurations - telescopes' PSFs - optical throughput

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/calibpipe/uc-cp-001.cwl

Branch/Commit ID: 76f7c25c0472da23b7e0bfe9f2c18ab6bc369c9d
workflow graph wf_trim_and_map_se_nostats.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se_nostats.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph Report generation workflow

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/report-wf.cwl

Branch/Commit ID: 2691061efa8341166ad6518688e5e6c0fb9a8fbf
workflow graph hisat2-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856
workflow graph wf_clipseqcore_chimeric_se_1barcode.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_clipseqcore_chimeric_se_1barcode.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph ValidateArrayElementCoordinates

Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateArrayElementCoordinates.cwl

Branch/Commit ID: first-example
workflow graph ReceiveAndAssert

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

 https://github.com/gammasim/workflows.git

Path: workflows/ReceiveAndAssert.cwl

Branch/Commit ID: 13a1a949db93afa18ffe8180ff9549e395184e4b
workflow graph ReceiveAndAssert

Receive simulation model parameter update or data to derive simulation model parameter(s) (e.g., by querying a database or triggered by an interface input). Assert ingest using a pre-defined schema describing the required input data. DEVELOPERNOTE - missing step of metadata enrichment?

 https://github.com/gammasim/workflows.git

Path: workflows/ReceiveAndAssert.cwl

Branch/Commit ID: cc9902d92de18a6b2bf83dfbc50201cf1b7477b4