Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 0fed1c9 |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.19.0 |
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wgs_alignment_fq_wf.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_alignment_fq_wf.cwl Branch/Commit ID: dev |
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EMG assembly for paired end Illumina
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: master |
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wgs alignment and somatic variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_wgs_nonhuman.cwl Branch/Commit ID: low-vaf |
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sc_atac_seq_process_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_process_and_analyze.cwl Branch/Commit ID: 7fed36f |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: test |
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readme-genePrediction-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_create_readme/readme-genePrediction-workflow.cwl Branch/Commit ID: master |
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qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: qa_check_subwf.cwl Branch/Commit ID: develop |
