Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_gvcf.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph collect_pair_files.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/collect_pair_files.cwl

Branch/Commit ID: 7c694b51d9d593439cf8ab3e5006665f0bbe2149
workflow graph bwa-mem-sort-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/bwa-mem-sort-distr.cwl

Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23
workflow graph geogrid_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/geogrid_workflow.cwl

Branch/Commit ID: 70c6a6016eeb4434a3ad82af7908b83d4ea37ce7
workflow graph map medium and long reads (greater than 100 bp) against reference genome

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-paired.cwl

Branch/Commit ID: 1bfe9fc07978c8463399eec690798effb8431c35
workflow graph wrf_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wrf_workflow.cwl

Branch/Commit ID: 70c6a6016eeb4434a3ad82af7908b83d4ea37ce7
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: 5fda2d9eb52a363bd51011b3851c2afb86318c0c
workflow graph rest.cwl

https://github.com/yuandou168/FL_workflows.git

Path: workflows/rest.cwl

Branch/Commit ID: 0f9e76d981ca7b100fb9e170519b427926e590a0
workflow graph dragen-germline-pipeline__4.2.4.cwl

https://github.com/umccr/cwl-ica.git

Path: workflows/dragen-germline-pipeline/4.2.4/dragen-germline-pipeline__4.2.4.cwl

Branch/Commit ID: 74bd1b74b5749968b20de2d7d47ff96b9036a8b7