Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 Packed ID: main |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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GATKBaseRecalBQSRWorkflow_4_1_3.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975 |
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Replace legacy AML Trio Assay
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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gather AML trio outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
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genomics-workspace.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
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bact_get_kmer_reference
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 71e3a42eadc007b66ef4689086530dfc3123d32f |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489 Packed ID: main |