Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
scatter-valuefrom-wf6.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 |
||
qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: qiime2-05-phylogeny.cwl |
||
Subworkflow that runs cnvkit in single sample mode and returns a vcf file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
||
wgs alignment and tumor-only variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 3bb0693076adc1543079a6b136c74906ad546ac6 |
||
rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: 8967e816cb89dd9349c8c6deff686aeb8b118f1c |
||
wgs alignment and tumor-only variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
||
scatter-wf4.cwl#main
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: 819c81af5449ec912bbbbead042ad66b8d3fd8d4 Packed ID: main |
||
gathered exome alignment and somatic variant detection for cle purpose
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |
||
GATKBaseRecalBQSRWorkflow_4_1_3.cwl
|
https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/GATKBaseRecalBQSRWorkflow_4_1_3.cwl Branch/Commit ID: 837622844b24a90eda4f0589cc557f6e4ca0d975 |
||
Replace legacy AML Trio Assay
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 9161ef43f7bf0e22b365fde9ec92edcb8601798e |