Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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kfdrc_alignment_pipeline.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: dev/pilot-run/worklflows/kfdrc_alignment_pipeline.cwl Branch/Commit ID: 6f1cc654f6e452430fa975800d5fc5982103050e |
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Detect DoCM variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87 |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_mouse.cwl Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: f615832615c3b41728df8e47b72ef11e37e6a9e5 |
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MoveData-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: MoveData-workflow.cwl Branch/Commit ID: cbcba0db7174398aa6a009ef2a63a93f8fa6bf52 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd |
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split_bam_subpipeline.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/split_bam_subpipeline.cwl Branch/Commit ID: db347697cbf46ed1d160d50666943bd56a2646f4 |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d |