Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: 10870aefd20469e728969269ff3c54b3b8339a18
workflow graph wf_get_peaks_pe.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_pe.cwl

Branch/Commit ID: e2a314ff7646c4ea7b90f65caad0452ef6874757
workflow graph kmer_seq_entry_extract_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl

Branch/Commit ID: d87a0786b52809b36201adb7d3d3ab2b8bbbef20
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: 496b3e2bff8c20d5a7d5c3cbe9b64697767b1c13
workflow graph immune_subtype_workflow.cwl

https://github.com/CRI-iAtlas/iatlas-workflows.git

Path: Immune_Subtype_Clustering/workflow/immune_subtype_workflow.cwl

Branch/Commit ID: 2fd21821684452052c80954fd74a6fa90c343ae9
workflow graph cat_fastq.cwl

https://github.com/ngs-mstb/micgent.git

Path: python/lib/MICGENT/data/cwl/cat_fastq.cwl

Branch/Commit ID: f0c223e69db275f0d251d882ddeba3ae497999e6
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
workflow graph ChIP-seq peak caller workflow MACS2 based

This workflow execute peak caller and QC for ChIP-seq using MACS2

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl

Branch/Commit ID: 06501cfc314e36749043431e67c2990966b452e0
workflow graph immune_subtype_workflow.cwl

https://github.com/CRI-iAtlas/iatlas-workflows.git

Path: Immune_Subtype_Clustering/workflow/immune_subtype_workflow.cwl

Branch/Commit ID: 3acab4d22ff0f9657dc8c5685799898a2fc2fd25