Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315 |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3 |
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Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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04-quantification-pe-unstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-unstranded.cwl Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: a34f47d1e37af51e387ecdfa5c3047f106c1146b |
