Explore Workflows

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: sc_atac_seq_prep_process_analyze.cwl

Branch/Commit ID: d0e845d

https://github.com/pvanheus/lukasa.git

Path: make_search_pair_workflow.cwl

Branch/Commit ID: main

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass2.cwl

Branch/Commit ID: test

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Analyze_Reads_TCR.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-inputdefault.cwl

Branch/Commit ID: main

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-transeq-blast-clustalo.cwl

Branch/Commit ID: master

https://github.com/sentieon/sentieon-cwl.git

Path: stage/hc-distr.cwl

Branch/Commit ID: master

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main

This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets).

https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl

Branch/Commit ID: main

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: d2d5127