Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Exome QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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bam_readcount workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87 |
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kfdrc_bwamem_subwf.cwl
|
https://github.com/kids-first/kf-alignment-workflow.git
Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: 13a9d4f9b6a895a6bdd2b1590d556c06fe04fccd |
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HS Metrics workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315 |
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CODEX analysis pipeline using Cytokit
|
https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 900c0bce5268977bce7ed034789cc07a567ba422 |
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textures.cwl
Create emblem textures |
https://github.com/undu/stellaris-emblem-lab.git
Path: textures/textures.cwl Branch/Commit ID: aca472a8f0b95118e227f98fc0d550ad651ff631 |
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Unaligned BAM to BQSR and VCF
|
https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/workflow_no_dup_marking.cwl Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31 |
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lobSTR-workflow.cwl
|
https://github.com/common-workflow-language/cwlviewer.git
Path: src/test/resources/cwl/lobstr-v1/lobSTR-workflow.cwl Branch/Commit ID: 244afa5f14a285c82e3732001526446b8a189948 |
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STAR-Alignment-PE
This workflow aligns the fastq files using STAR for paired-end samples |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Alignments/star-alignment.cwl Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2 |
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gather-metrics-sample.cwl
|
https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/modules/sample/gather-metrics-sample.cwl Branch/Commit ID: 8766def7f70f329e2a4c56239f141685a873599b |