Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 049f4aeff4c4a1b8421cac9b1c1c1f0da5848315
	pcr-bottleneck-coef.cwl ChIP-seq - map - PCR Bottleneck Coefficients	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
	count-lines12-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
	05-quantification-with-control.cwl ChIP-seq - Quantification - samples: treatment and control	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/05-quantification-with-control.cwl Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3
	split-bams-by-strand-and-index.cwl Split reads in a BAM file by strands and index forward and reverse output BAM files	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/quant/split-bams-by-strand-and-index.cwl Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1
	wf_demultiplex_pe.cwl	https://github.com/YeoLab/eclip.git Path: cwl/wf_demultiplex_pe.cwl Branch/Commit ID: b4be31e4b809716f65354c0a3d0eff49949eabff
	scatter GATK HaplotypeCaller over intervals	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d
	wf_trim_and_map_pe.cwl This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment	https://github.com/YeoLab/eclip.git Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: b4be31e4b809716f65354c0a3d0eff49949eabff