Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	dedup-2-pass.cwl run 2-pass dedup: algo LocusCollector + algo Dedup sequentially	https://github.com/sentieon/sentieon-cwl.git Path: stage/dedup-2-pass.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23
	CroMaSt.cwl	https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git Path: CroMaSt.cwl Branch/Commit ID: b5a9d4b025ec8e065bae97eeb96f10db2dd8e1e6
	umi per-lane alignment subworkflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: e649fcb1092905c539be026a3f23c82d5b0871d2
	Whole Exome Sequencing Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery	https://github.com/Duke-GCB/bespin-cwl.git Path: packed/exomeseq.cwl Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf Packed ID: main
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/cwl-v1.2.git Path: tests/step-valuefrom2-wf.cwl Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733
	bqsr-distr.cwl	https://github.com/sentieon/sentieon-cwl.git Path: stage/bqsr-distr.cwl Branch/Commit ID: d20382adfe7285cb517a25d95d2bcb7586546e23
	calculate_contamination_workflow.cwl GATK4.1.2 Calculate tumor-normal contamination workflow	https://github.com/nci-gdc/gatk4_mutect2_cwl.git Path: subworkflows/calculate_contamination_workflow.cwl Branch/Commit ID: 138d484362084dfc97d9fb7d839855b4bc2c5599
	workflowSegment.cwl	https://github.com/aplbrain/saber.git Path: saber/i2g/examples/I2G_Seg_Workflow/workflowSegment.cwl Branch/Commit ID: 051b9506fd7356113be013ac3c435a101fd95123
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 69c0f25d08cfa02d8bfaa85ce5d70dd14cc52e3f
	ACCESS_pipeline.cwl	https://github.com/mskcc/ACCESS-Pipeline.git Path: workflows/ACCESS_pipeline.cwl Branch/Commit ID: b0f226a9ac5152f3afe0d38c8cd54aa25b8b01cf