Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph ViPhOG annotations

\"Run viral_contigs_annotation.py on an array of files\"

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/Annotation/viral_annotation_swf.cwl

Branch/Commit ID: master
workflow graph steps.cwl

https://github.com/tobiaszjarosiewicz/cwl_test.git

Path: steps.cwl

Branch/Commit ID: master
workflow graph check_md5_wf.cwl

https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git

Path: workflow/checker-workflows/check_md5_wf.cwl

Branch/Commit ID: master
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: master
workflow graph GATK4_SomaticVariantCaller_4_1_3_0.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/filter_vcf.cwl

Branch/Commit ID: toil_compatibility
workflow graph tt_kmer_top_n.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_top_n.cwl

Branch/Commit ID: test
workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/vavien/bi-cwl.git

Path: workflow.cwl

Branch/Commit ID: main