Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	01-qc-pe.cwl ChIP-seq 01 QC - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	transcriptome-annotation.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Annotation/transcriptome-annotation.cwl Branch/Commit ID: e6efd0c93582ad6435ed10020544ef8982a25a8e
	gatk-4.0.0.0-library-cram-to-gvcfs.cwl	https://github.com/wtsi-hgi/arvados-pipelines.git Path: cwl/workflows/gatk-4.0.0.0-library-cram-to-gvcfs.cwl Branch/Commit ID: 8d9c9155a49045762cbf5a1e584fc20517b8be87
	Unaligned BAM to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	Compute library complexity This workflow compute library complexity	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: 265440c63ab75d2451c90bcd116e725626e9a608
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	alignment_prep.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/harmonization/alignment_prep.cwl Branch/Commit ID: f55f0011de7db66f873ffb0f700f3fe26b33911e
	Varscan Workflow	https://github.com/litd/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7