Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6
	ROSE: rank ordering of super-enhancers Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)	https://github.com/datirium/workflows.git Path: workflows/super-enhancer.cwl Branch/Commit ID: a839eb6390974089e1a558c49fc07b4c66c50767
	kfdrc_cram_reheader_wf.cwl	https://github.com/cr-ste-justine/chujs-alignment-workflow.git Path: workflows/kfdrc_cram_reheader_wf.cwl Branch/Commit ID: c8255e2aab840f671d9f142d74f915c76415ff51
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	Vcf concordance evaluation workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Raw sequence data to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	Chipseq alignment with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f