Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph methylCtools_trim_align_merge_sort_dedup.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/tools/methylCtools_trim_align_merge_sort_dedup.cwl

Branch/Commit ID: main
workflow graph 01-qc-se.cwl

ATAC-seq 01 QC - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: v1.0
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Example of setting up a simulation system

Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

https://github.com/stain/biobb_example_workflow.git

Path: protein_md.cwl

Branch/Commit ID: master
workflow graph pindel parallel workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: pindel/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: a04e55b
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-alignment.cwl

Branch/Commit ID: master
workflow graph wf_simulate_data_collection.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/simulate_data_collection/wf_simulate_data_collection.cwl

Branch/Commit ID: master
workflow graph emblem_textures.cwl

https://github.com/undu/stellaris-emblem-lab.git

Path: textures/emblem_textures.cwl

Branch/Commit ID: master
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl

Branch/Commit ID: master