Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam-filtering BAM filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/subworkflows/bam_filtering.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23
	gaps_or_not.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: gaps_or_not.cwl Branch/Commit ID: 0ecf492419ddaa015f14a163381948c53b3deea6
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: 0ecf492419ddaa015f14a163381948c53b3deea6
	simple_two_step.cwl	https://github.com/ncbi/cwl-demos.git Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: 8c1da0a9846a9c06e19461dc05854260bfbb0d84
	standard_pipeline.cwl This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2	https://github.com/mskcc/ACCESS-Pipeline.git Path: workflows/standard_pipeline.cwl Branch/Commit ID: bccb338be356db83ad178be2aa9634ae86cb5211
	variant-calling-pair.cwl	https://github.com/mskcc/roslin-cwl.git Path: modules/pair/variant-calling-pair.cwl Branch/Commit ID: 4034144f39a9428307e82efe1f812c1d37c79de5
	protein annotation Proteins - predict, filter, cluster, identify, annotate	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/protein-filter-annotation.workflow.cwl Branch/Commit ID: 4e4d2e674bde612f98f2b0370445f8b2a47587df
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: add6b7724698694e0e72d972e2e85e1ae4e67902
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 686b570a9fa46f3ace3f8e9935490b75df86a1fc
	bwa_index	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_index.cwl Branch/Commit ID: de9cb009f8fe0c8d5a94db5c882cf21ddf372452