Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: ae57b60e9b01e3f0f02f4e828042748409dff5a3
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533
workflow graph magicblast-alignment-pe

This workflow aligns the fastq files using magicblast for paired-end samples

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/magicblast-alignment.cwl

Branch/Commit ID: 1b1cb5bbbe53a2dd5d7de7cdbff19c1bdbe23a49
workflow graph scatter-valuefrom-wf5.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf5.cwl

Branch/Commit ID: a5073143db4155e05df8d2e7eb59d9e62acd65a5
workflow graph assm_assm_blastn_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_assm_assm_blastn_wnode.cwl

Branch/Commit ID: 4ea5956bb97ea2eb6de124bc9b6a6a81a14fd2e7
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 4ea5956bb97ea2eb6de124bc9b6a6a81a14fd2e7
workflow graph sjaracne_workflow.cwl

https://github.com/jyyulab/SJARACNe.git

Path: SJARACNe/cwl/sjaracne_workflow.cwl

Branch/Commit ID: 08214ce04efd6d605bbbc151fb043dbf3cfa3798
workflow graph preprocessing.cwl

https://github.com/MontgomeryLab/tinyRNA.git

Path: tiny/cwl/workflows/preprocessing.cwl

Branch/Commit ID: 0921ad0379cfa984798554464f556f1ba0ff562f
workflow graph tinyrna_wf.cwl

https://github.com/MontgomeryLab/tinyRNA.git

Path: tiny/cwl/workflows/tinyrna_wf.cwl

Branch/Commit ID: 0921ad0379cfa984798554464f556f1ba0ff562f
workflow graph Perform SV calling of sample vs matched control using Delly, Lumpy, and Manta

https://github.com/mr-c/PACT.git

Path: subworkflows/sv_caller.cwl

Branch/Commit ID: 45805a5a6dee3d4038d5533c156642f4e5b6a180