Explore Workflows
View already parsed workflows here or click here to add your own
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Production Configuration
This workflow prepares the configuration of the subsequent production steps. |
https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git
Path: workflows/wms/uc-wms-XXX.cwl Branch/Commit ID: 3ee0537d37f8e32666d2ec72e54f42a40f72bce8 |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c |
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preprocess fasta
Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020 |
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Bisulfite QC tools
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993 |
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module-1.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/module-1.cwl Branch/Commit ID: f874bd8a9bb7da9839f0aa6be708d5d16f72945d |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6 |
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wf.cwl#VDJ_GatherCalls.cwl
VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file. |
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61 Packed ID: VDJ_GatherCalls.cwl |
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wf.cwl#VDJ_Preprocess_Reads.cwl
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https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61 Packed ID: VDJ_Preprocess_Reads.cwl |
