Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Detect whitelisted variants

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/whitelist.cwl

Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
workflow graph Averages and aligns the unampped instances

First computes average per UniProt domain instance and then aligns all the average structures against core average structure. Outputs the alignment results along with the structures passing and failing the threshold for given Kpax score.

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/unmapped_unp_avg_align.cwl

Branch/Commit ID: b5a9d4b025ec8e065bae97eeb96f10db2dd8e1e6
workflow graph revcomp_with_rename.cwl

https://github.com/alexbarrera/GGR-cwl.git

Path: workflows/workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
workflow graph count-lines1-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines1-wf-noET.cwl

Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89
workflow graph exomeseq.cwl#exomeseq-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: exomeseq-02-variantdiscovery.cwl
workflow graph hisat2-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-cufflinks/paired_end/hisat2-cufflinks_wf_pe.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856
workflow graph iteration.cwl

https://github.com/LanderOtto/tmp.git

Path: cwl/iteration.cwl

Branch/Commit ID: main
workflow graph main.cwl

https://github.com/LanderOtto/tmp.git

Path: cwl/main.cwl

Branch/Commit ID: main
workflow graph hisat2-stringtie_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-stringtie/single_end/hisat2-stringtie_wf_se.cwl

Branch/Commit ID: 4e84905f265e1db212c406d34ae4db2bf565e856
workflow graph Hmmscan

Run hmmscan over an array of files (supports empty or non existent files). Each file will be chunked in 1000 sequences per file to improve the performance. The output will be the concatenation of the output tables.

https://github.com/EBI-Metagenomics/emg-viral-pipeline.git

Path: cwl/src/Tools/HMMScan/hmmscan_swf.cwl

Branch/Commit ID: 3708071d71b19e72c71c06dd2c8aa3c5a0eb232c